JCC is way better than Total. Total is a sweat box in the summer...way too hot...cold as shit in the winter...a pole barn essentially. I would not go so far as to say the reffing is better at the JCC (I am friends with the guys at the JCC as well so if anything I would give them the benefit of the doubt). They put way too much emotion into the calls. Very sensitive...bitch one time about one call and you will be fucked for the remaining time you play in that league, rink, etc.
Also depends on the division you play in. Tin (pretty mild, talent low), Iron (A little choppy, mixed talent), copper (decent, but somewhat choppy, talent getting marginally better), Bronze (Better, more speed, talent is mid range and up), Silver (Fast paced, likely the best players in the area, cleaner play) 30+ open (slower, sometimes decent talent, choppy if you get a team of older guys that can't keep up)...Gold (this is a draft league so either you make it or you don't, talent rich, fast paced, short season)